Knowledge Graph Fragments
View JSONQuery federated RDF knowledge graphs at bounded cost — from a browser, curl, or an agent, at the same URLs.
Datasets
Babel KG
Babel creates cliques of equivalent identifiers across many biomedical vocabularies
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KB Bio 101
A knowledge base created from an introductory biology textbook
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BioBricks AOP-Wiki
BioBricks AOP-Wiki is an open knowledge graph for Adverse Outcome Pathways from the AOP-Wiki.
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BioBricks ICE
BioBricks ICE (Integrated Chemical Environment) is an open knowledge graph for cheminformatics and chemical safety data from EPA's CompTox database.
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BioBricks MeSH
BioBricks MeSH is an open knowledge graph of Medical Subject Headings (MeSH) biomedical vocabulary.
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BioBricks PubChem Annotations
BioBricks PubChem Annotations is an open knowledge graph of chemical annotations from PubChem.
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BioBricks Tox21
BioBricks Tox21 is an open knowledge graph for Tox21 toxicology screening data.
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BioBricks ToxCast
BioBricks ToxCast is an open knowledge graph for EPA ToxCast high-throughput screening data.
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Bio-Health KG
Bio-Health KG is a dynamically-updated open knowledge network for health, integrating biomedical insights with social determinants of health.
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BiomarkerKB KG
The BiomarkerKB knowledge graph is a structured network that connects biomarkers to diseases, drugs, biological entities, and evidence from the scientific literature.
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Climate Models KG
Climate Models KG is a knowledge graph to support evaluation and development of climate models.
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CFDE REVEAL Knowledge Graph
The CFDE REVEAL Knowledge Graph is a statistically inferred genomic evidence graph to integrate and disseminate knowledge within the Common Fund Data Ecosystem (CFDE).
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DREAM-KG
Develop Dynamic, REsponsive, Adaptive, and Multifaceted Knowledge Graphs to Address Homelessness With Explainable AI
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EvoWeb
EvoWeb - An Open Knowledge Graph of Co-evolving Genes (NIAID)
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SAWGraph FRS KG
The FRS (Facility Registry Service) KG is the part of the SAWGraph project that stores data about facilities from EPA's Facility Registry service (FRS) together with their NAICS industry classification and the spatial location.
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Gene Expression Atlas
Query pre-computed differential gene expression (log2 fold changes and adjusted p-values) for genes across diseases, tissues, cell types, developmental stages, and sex, drawn from a curated selection of 243 EMBL-EBI Expression Atlas studies. Use this graph to retrieve computed differential-expression results and expression associations for the studies it includes. It is a hand-picked subset, NOT a comprehensive index of the gene-expression datasets available for a given disease — to discover the full set of datasets for a condition (for example when assembling studies for your own pooled or meta-analysis), use a dataset-discovery index such as the NIAID Data Ecosystem (nde) graph.
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GEOCONNEX
Geoconnex is an open, community-driven knowledge graph linking U.S. hydrologic features to enable seamless water data discovery, access, and collaborative monitoring.
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GlyGen KG
A knowledge graph of glycans, glycoproteins, genes that code for these proteins and glycosylation sites integrated with protein, gene, disease and publication data.
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SAWGraph Hydrology KG
The Hydrology KG is the part of the SAWGraph project that describes streams, waterbodies and wells and their locations.
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ID Mappings
Mappings using standard RDF predicates between Wikidata entities and external identifiers represented as RDF IRIs
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KnowWhereGraph Environment
Environmental observation layers from KnowWhereGraph, covering SSURGO soils, the USDA Cropland Data Layer, EPA air quality measurements, and NOAA climate division observations for the United States.
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KnowWhereGraph Hazards
Natural hazard and disaster layers from KnowWhereGraph, covering storms, hurricanes, earthquakes, wildfires, smoke, drought, FEMA disaster declarations, and ReliefWeb reports, located by S2 cell and administrative region.
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KnowWhereGraph Places
Place and region identifiers from KnowWhereGraph (global administrative areas, US Census regions, ZIP code areas, weather forecast zones, judicial districts, GNIS features, and highways) with their relations to each other and to S2 cells.
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KnowWhereGraph Society
Demographic and public health layers from KnowWhereGraph, covering US Census statistical areas, county-level public health indicators, hospitals, public health departments, and federally qualified health centers.
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Medical Device Knowledge Graph
Public FDA medical-device data in one linked graph, covering clearances and approvals, UDI device records, MAUDE adverse events, recalls, establishments, standards, and 21 CFR.
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NASA-GESDISC-KG
The NASA Knowledge Graph Dataset is an expansive graph-based dataset designed to integrate and interconnect information about satellite datasets, scientific publications, instruments, platforms, projects, data centers, and science keywords. This knowledge graph is particularly focused on datasets managed by NASA's Distributed Active Archive Centers (DAACs), which are NASA's data repositories responsible for archiving and distributing scientific data. In addition to NASA DAACs, the graph includes datasets from 184 data providers worldwide, including various government agencies and academic institutions.
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NCI-PID 2.0 KG
The NCI-PID 2.0 Knowledge Graph converts NCI Pathway Interaction Database version 2.0 networks into RDF, capturing protein interactions, signaling pathways, and post-translational modifications enriched with INDRA evidence metadata.
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NIAID Data Ecosystem KG
The nde (NIAID Data Ecosystem) knowledge graph is a dataset-discovery index for finding biomedical research datasets — including gene-expression / transcriptomics data (RNA-seq, microarray, single-cell / single-nucleus), other -omics, clinical, epidemiological, imaging, and flow-cytometry data — searchable by disease or condition, organism, and source repository. It mirrors dataset metadata from NCBI GEO, ArrayExpress, and 70+ repositories; coverage is deepest for infectious and immune-mediated disease (its NIAID mission) but, because it indexes general-purpose repositories such as GEO, it also covers datasets for many non-infectious diseases and conditions (e.g. cancer, diabetes, kidney disease). Use it to find and triage candidate datasets for a specific disease — for example when assembling studies for a pooled or meta-analysis of differential gene expression. It stores dataset-level metadata and links to the primary repository; it does NOT store per-sample data or computed differential-expression values (log2 fold changes / p-values).
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NeST KG
The NeST (Nested Systems in Tumors) Knowledge Graph converts the NeST hierarchical map of cancer protein systems into RDF, together with the IAS (Integrated Association Stringency) protein-association network from which the map was derived. It captures the nested containment hierarchy of protein systems, their member proteins, per-system cancer-mutation statistics and MONDO-typed cancer associations, and ~210k scored protein-protein associations as reified statements.
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Neighborhood Information KG
Neighborhood Information KG (NIKG) is a knowledge graph warehouse for neighborhood information.
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Open Annotations for Rare Diseases (OARD) Knowledge Graph
Clinical associations between rare diseases and phenotypes derived from electronic health records
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PanKgraph
PanKgraph — PanKbase Knowledge Graph (NIDDK)
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PHASES KG
Knowledge graph Promoting Healthy Aging through Semantic Enrichment
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Protein Knowledge Network
The Protein Knowledge Network (ProKN) integrates protein-centric data with the genomic-centric datasets of the Common Fund Data Ecosystem (CFDE), spanning heterogeneous biological data types across multiple domains to foster CFDE re-use and collaboration through enhanced connectivity and data integration, enabling new capabilities for functional genomics and systems-level understanding of disease mechanisms.
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Rare Disease Knowledge Graph
RDKG is an open knowledge graph for rare diseases that integrates standardized disease identifiers and cross-references to support discovery and evidence synthesis.
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Rural Resilience KG
Rural Resilience KG is a cross-domain knowledge graph to integrate health and justice for rural resilience.
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SAWGraph PFAS KG
The Safe Agricultural Products and Water Graph (SAWGraph) PFAS KG stores data on PFAS observations and releases, describing the samples, the geospatial features they were taken from, the sampled environmental media, the specific chemical substances and the measurement values observed.
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SCALES
SCALES is an integrated justice platform to connect criminal justice data across data silos.
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SecureChain KG
SecureChain is a knowledge graph for resilient, trustworthy, and secure software supply chains.
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SOCKG
The Soil Organic Carbon Knowledge Graph (SOCKG) enhances robust soil carbon modeling, which is crucial for voluntary carbon markets.
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SAWGraph Spatial KG
The SAWGraph Spatial KG is part of the Safe Agricultural Products and Water Graph (SAWGraph) project. It contains all the Level 13 grid cells from the S2 grid as well as administrative regions of levels 1 to 3 (states, counties, and county subdivisions) and the spatial relationships between them for the 48 contiguous states in the U.S.
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SPOKE GeneLab
The spoke-genelab KG complements the spokeokn (SPOKE Open Knowledge Network) KG and is designed to integrate omics data from NASA’s Open Science Data Repository (OSDR/GeneLab), which hosts results from spaceflight experiments.
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SPOKE-OKN
The spoke-okn (SPOKE Open Knowledge Network) KG is a comprehensive biomedical and environmental health knowledge graph that integrates diverse data across genomics, environmental science, and public health.
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SUDOKN
Supply and Demand Open Knowledge Network is an interconnected network of publicly available manufacturing capability data focused on Small and Medium-Sized Manufacturers.
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Ubergraph
Integrated suite of OBO ontologies with precomputed inferred relationships
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UF-OKN
The Urban Flooding Open Knowledge Network (UF-OKN) is an informational infrastructure built using knowledge graphs aiming to extract structured content from the information scattered across open-source geospatial datasets and hydrologic models.
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Wildlife-KN
This project seeks to create a comprehensive, integrative knowledge network for the management of wildlife in the context of climate change
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Using this service
Every dataset page lists its releases; a release's manifest page carries runnable query forms, its prefixes, and its capabilities. The same URLs answer JSON — with $KGF as this server's base URL:
curl "$KGF/" # this catalog
curl "$KGF/babel" # release history
curl "$KGF/babel/latest/fragment?limit=25" # one page of triplesImplementation
- kgf
0.4.0- protocol
1
Request caps
Requests above these published caps are refused, never silently reduced.
- max_limit
- 10 000
- default_limit
- 100
- max_sample
- 1 000
- max_bindings
- 1 000
- max_star_subjects
- 1 000
- max_star_width
- 32
- max_search_predicates
- 128
- max_search_results
- 1 000
- max_label_iris
- 10 000
- max_label_languages
- 16
- max_label_predicates
- 16
- max_verbalize_roots
- 100
- max_schema_items
- 1 000
Response budgets
Exhausting a budget produces an explicitly incomplete response with a reason.
- max_output_rows
- 100 000
- max_output_terms
- 1 000 000
- max_response_bytes
- 67 108 864
- max_request_bytes
- 1 048 576
- max_term_bytes
- 65 536
- candidate_budget
- 1 000 000
- time_budget_ms
- 2 000