{
  "id": "nde",
  "dataset_iri": "https://purl.org/okn/frink/kg/nde",
  "title": "NIAID Data Ecosystem KG",
  "description": "The nde (NIAID Data Ecosystem) knowledge graph is a dataset-discovery index for finding biomedical research datasets — including gene-expression / transcriptomics data (RNA-seq, microarray, single-cell / single-nucleus), other -omics, clinical, epidemiological, imaging, and flow-cytometry data — searchable by disease or condition, organism, and source repository. It mirrors dataset metadata from NCBI GEO, ArrayExpress, and 70+ repositories; coverage is deepest for infectious and immune-mediated disease (its NIAID mission) but, because it indexes general-purpose repositories such as GEO, it also covers datasets for many non-infectious diseases and conditions (e.g. cancer, diabetes, kidney disease). Use it to find and triage candidate datasets for a specific disease — for example when assembling studies for a pooled or meta-analysis of differential gene expression. It stores dataset-level metadata and links to the primary repository; it does NOT store per-sample data or computed differential-expression values (log2 fold changes / p-values).",
  "publisher": {
    "name": "Andrew Su",
    "contact": "mailto:asu@scripps.edu"
  },
  "predicate_roles": {
    "label": [
      "http://schema.org/name",
      "http://schema.org/alternateName"
    ]
  },
  "current": "v0.0.3",
  "releases": [
    {
      "version": "v0.0.3",
      "content_digest": "sha256:2bef278007d2ba212a01e51ec6ec18b2debe81628564327a550ab2ce64fc7b07",
      "url": "/kgf/nde/v/v0.0.3/",
      "links": {
        "manifest": "/kgf/nde/v/v0.0.3/manifest",
        "fragment": "/kgf/nde/v/v0.0.3/fragment",
        "tpf": "/kgf/nde/v/v0.0.3/tpf",
        "count": "/kgf/nde/v/v0.0.3/count",
        "describe": "/kgf/nde/v/v0.0.3/describe",
        "summary": "/kgf/nde/v/v0.0.3/summary",
        "schema": "/kgf/nde/v/v0.0.3/schema",
        "void": "/kgf/nde/v/v0.0.3/void",
        "sample": "/kgf/nde/v/v0.0.3/sample",
        "search": "/kgf/nde/v/v0.0.3/search",
        "terms": "/kgf/nde/v/v0.0.3/terms",
        "labels": "/kgf/nde/v/v0.0.3/labels",
        "verbalize": "/kgf/nde/v/v0.0.3/verbalize",
        "hdt": "/kgf/nde/v/v0.0.3/export/data.hdt"
      }
    }
  ]
}